Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
UVM | rs10851396 | chr15:40860919 | C/G | 0.000227 | 67 | 16.78 | 26.12 | 27.87 | KM Plot |
UVM | rs10851484 | chr15:29418987 | G/A | 8.47E-5 | 66 | 25.32 | 41.87 | 7.6 | KM Plot |
UVM | rs10851485 | chr15:29420188 | T/C | 0.000117 | 64 | 25.32 | 41.87 | 7.6 | KM Plot |
UVM | rs10929265 | chr2:239026198 | G/A | 4.67E-5 | 67 | 27.37 | 24.6 | 1.18 | KM Plot |
UVM | rs11050592 | chr12:9529340 | C/T | 0.000111 | 67 | 27.87 | 23.63 | 7.6 | KM Plot |
UVM | rs11050925 | chr12:9581798 | C/T | 0.000174 | 65 | 27.62 | 22.98 | 7.6 | KM Plot |
UVM | rs11051095 | chr12:9614021 | A/C | 0.00012 | 67 | 27.37 | 23.63 | 7.6 | KM Plot |
UVM | rs11052207 | chr12:9805836 | A/G | 0.000112 | 67 | 27.62 | 21.8 | 7.6 | KM Plot |
UVM | rs11052209 | chr12:9806132 | T/A | 0.000112 | 67 | 27.62 | 21.8 | 7.6 | KM Plot |
UVM | rs11052234 | chr12:9810914 | A/G | 0.000122 | 67 | 27.87 | 21.27 | 7.6 | KM Plot |
UVM | rs11052235 | chr12:9811303 | G/A | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs11052245 | chr12:9812086 | C/T | 0.000125 | 67 | 27.88 | 21.8 | 7.6 | KM Plot |
UVM | rs11052254 | chr12:9812783 | G/A | 0.000112 | 67 | 27.62 | 21.8 | 7.6 | KM Plot |
UVM | rs11052282 | chr12:9820080 | C/A | 0.000131 | 66 | 27.87 | 21.8 | 7.6 | KM Plot |
UVM | rs11070279 | chr15:40860946 | A/G | 0.000227 | 67 | 16.78 | 26.12 | 27.87 | KM Plot |